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| Current League Position | League Position Analysis | Squad Statistics |
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| Villarreal CF | 2 | 1 | Real Madrid B | 17/08/2012 |
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| CE Sabadell FC | 0 | 0 | Villarreal CF | 25/08/2012 |
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| Villarreal CF | 2 | 1 | CD Guadalajara | 01/09/2012 |
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| Ponferradina | 0 | 1 | Villarreal CF | 08/09/2012 |
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| Villarreal CF | 1 | 0 | Hércules CF | 16/09/2012 |
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| UD Las Palmas | 2 | 2 | Villarreal CF | 22/09/2012 |
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| Villarreal CF | 2 | 0 | Córdoba CF | 29/09/2012 |
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| Real Sporting de Gijón | 2 | 0 | Villarreal CF | 07/10/2012 |
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| Villarreal CF | 1 | 1 | SD Huesca | 13/10/2012 |
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| Recreativo de Huelva | 2 | 0 | Villarreal CF | 21/10/2012 |
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| Villarreal CF | 2 | 0 | CD Mirandés | 27/10/2012 |
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| CD Numancia | 1 | 1 | Villarreal CF | 03/11/2012 |
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| Villarreal CF | 1 | 1 | Real Murcia | 11/11/2012 |
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| Racing de Santander | 0 | 3 | Villarreal CF | 17/11/2012 |
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| Villarreal CF | 1 | 1 | CD Lugo | 24/11/2012 |
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| Elche CF | 1 | 0 | Villarreal CF | 02/12/2012 |
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| Villarreal CF | 4 | 0 | AD Alcorcón | 09/12/2012 |
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| Girona FC | 2 | 0 | Villarreal CF | 15/12/2012 |
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| Xerez CD | 0 | 0 | Villarreal CF | 20/12/2012 |
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| Villarreal CF | 1 | 3 | FC Barcelona B | 05/01/2013 |
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| UD Almería | 1 | 1 | Villarreal CF | 12/01/2013 |
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| Real Madrid B | 5 | 0 | Villarreal CF | 19/01/2013 |
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| Villarreal CF | 3 | 0 | CE Sabadell FC | 25/01/2013 |
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| CD Guadalajara | 0 | 0 | Villarreal CF | 02/02/2013 |
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| Villarreal CF | 3 | 0 | Ponferradina | 09/02/2013 |
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| Hércules CF | 1 | 1 | Villarreal CF | 17/02/2013 |
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| Villarreal CF | 1 | 1 | UD Las Palmas | 24/02/2013 |
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| Córdoba CF | 0 | 2 | Villarreal CF | 03/03/2013 |
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| Villarreal CF | 2 | 1 | Real Sporting de Gijón | 10/03/2013 |
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| SD Huesca | 0 | 1 | Villarreal CF | 16/03/2013 |
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| Villarreal CF | 1 | 1 | Recreativo de Huelva | 24/03/2013 |
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| CD Mirandés | 1 | 5 | Villarreal CF | 31/03/2013 |
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| Villarreal CF | 6 | 1 | CD Numancia | 07/04/2013 |
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| Real Murcia | 1 | 1 | Villarreal CF | 14/04/2013 |
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| Villarreal CF | 1 | 0 | Racing de Santander | 21/04/2013 |
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| CD Lugo | 0 | 0 | Villarreal CF | 27/04/2013 |
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| Villarreal CF | 2 | 3 | Elche CF | 05/05/2013 |
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| AD Alcorcón | 1 | 3 | Villarreal CF | 12/05/2013 |
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| Villarreal CF | 4 | 1 | Girona FC | 18/05/2013 |
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